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bipartite (version 0.74)
Visualises bipartite networks and calculates some ecological indices.
Description
See bipartite-package for more details.
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Install
install.packages('bipartite')
Monthly Downloads
4,361
Version
0.74
License
GPL
Maintainer
Carsten F Dormann
Last Published
February 20th, 2025
Functions in bipartite (0.74)
Search all functions
bipartite-package
Analysis of bipartite ecological webs.
shuffle.web
Shuffle web entries
genweb
Generate a random bipartite web
functspec
Calculates the functional specialisation index
nestedness.corso
Calculates the (weighted) nestedness of a network according to the method proposed by Corso et al. (2008), with weighting option by Galeano et al. (2008).
vazquenc
A pollination network.
plotweb
Visualize a bipartite interaction matrix (e.g. a foodweb)
plotweb2
Visualize a tripartite interaction matrix (e.g. a tritrophic foodweb)
kevan1970
A pollination network.
slope.bipartite
Slope of extinction simulation
motten1982
A pollination network.
memmott1999
Pollination network.
degreedistr
Fits functions to cumulative degree distributions of both trophic levels of a network.
olesen2002aigrettes
A pollination network.
C.score
Calculates the (normalised) mean number of checkerboard combinations (C-score) in a matrix
null.t.test
Compares observed pattern to random webs.
nestedness
Calculates nestedness temperature of presence/absence matrices
H2fun
Specialisation of a bipartite web.
extinction
Simulates extinction of a species from a bipartite network
mosquin1967
Pollination network.
compart
Detects compartments
discrepancy
Calculates discrepancy of a matrix
swap.web
Creates null model for bipartite networks
as.one.mode
Conversion of a network matrix
vazmasnc
A pollination network.
schemske1978
A pollination network.
empty
Deletes empty rows and columns from a matrix.
olesen2002flores
A pollination network.
specieslevel
Calculate various indices for network properties at the species level
vazcer
A pollination network.
vazllao
A pollination network.
V.ratio
Calculates the variance-ratio as suggested by Schluter (1984)
togetherness
Calculates the number of identical co-presences and co-absences for species-on-islands
small1976
A pollination network.
dfun
Calculates standardised specialisation index d' (d prime) for each species in the lower trophic level of a bipartite network.
visweb
Plotfunction to visualize a bipartite foodweb
networklevel
Analysis of bipartite webs at the level of the entire network
kato1990
No. of individuals caught in a pollination web of a Japanese beech forest.
vazmasc
A pollination network.
vazquec
A pollination network.
second.extinct
Secondary extinctions in bipartite networks
Safariland
Pollination web in Argentina.
barrett1987
Individuals caught in a pollination web in boreal Canada.
elberling1999
No. of visits in a pollination web of arctic-alpine Sweden.
vazarr
A pollination network.