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bipartite (version 0.83)
Visualising bipartite networks and calculating some ecological indices.
Description
See bipartite-package for more details.
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Install
install.packages('bipartite')
Monthly Downloads
5,440
Version
0.83
License
GPL
Maintainer
Carsten F Dormann
Last Published
October 7th, 2025
Functions in bipartite (0.83)
Search all functions
extinction
Simulates extinction of a species from a bipartite network
nodespec
Calculates the node-based specialisation index
as.one.mode
Conversion of a network matrix
vazcer
A pollination network.
nestedness.corso
Calculates the (weighted) nestedness of a network according to the method proposed by Corso et al. (2008), with weighting option by Galeano et al. (2008).
networklevel
Analysis of bipartite webs at the level of the entire network
vazllao
A pollination network.
plotweb2
Visualize a tripartite interaction matrix (e.g. a tritrophic foodweb)
swap.web
Creates null model for bipartite networks
mosquin1967
Pollination network.
bipartite-package
Analysis of bipartite ecological webs.
olesen2002aigrettes
A pollination network.
visweb
Plotfunction to visualize a bipartite foodweb
functspec
Calculates the functional specialisation index
genweb
Generate a random bipartite web
nestedness
Calculates nestedness temperature of presence/absence matrices
memmott1999
Pollination network.
slope.bipartite
Slope of extinction simulation
schemske1978
A pollination network.
compart
Detects compartments
discrepancy
Calculates discrepancy of a matrix
small1976
A pollination network.
Safariland
Pollination web in Argentina.
degreedistr
Fits functions to cumulative degree distributions of both trophic levels of a network.
H2fun
Specialisation of a bipartite web.
motten1982
A pollination network.
vazquenc
A pollination network.
vazquec
A pollination network.
vazmasc
A pollination network.
vazarr
A pollination network.
C.score
Calculates the (normalised) mean number of checkerboard combinations (C-score) in a matrix
dfun
Calculates standardised specialisation index d' (d prime) for each species in the lower trophic level of a bipartite network.
plotweb
Visualize a bipartite interaction matrix (e.g. a foodweb)
V.ratio
Calculates the variance-ratio as suggested by Schluter (1984)
barrett1987
Individuals caught in a pollination web in boreal Canada.
kato1990
No. of individuals caught in a pollination web of a Japanese beech forest.
vazmasnc
A pollination network.
shuffle.web
Shuffle web entries
null.t.test
Compares observed pattern to random webs.
kevan1970
A pollination network.
second.extinct
Secondary extinctions in bipartite networks
elberling1999
No. of visits in a pollination web of arctic-alpine Sweden.
specieslevel
Calculate various indices for network properties at the species level
togetherness
Calculates the number of identical co-presences and co-absences for species-on-islands
empty
Deletes empty rows and columns from a matrix.
olesen2002flores
A pollination network.