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bipartite (version 0.84)
Visualising bipartite networks and calculating some ecological indices.
Description
See bipartite-package for more details.
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Install
install.packages('bipartite')
Monthly Downloads
3,098
Version
0.84
License
GPL
Maintainer
Carsten F Dormann
Last Published
February 20th, 2025
Functions in bipartite (0.84)
Search all functions
kato1990
No. of individuals caught in a pollination web of a Japanese beech forest.
second.extinct
Secondary extinctions in bipartite networks
nestedness
Calculates nestedness temperature of presence/absence matrices
degreedistr
Fits functions to cumulative degree distributions of both trophic levels of a network.
networklevel
Analysis of bipartite webs at the level of the entire network
bipartite-package
Analysis of bipartite ecological webs.
swap.web
Creates null model for bipartite networks
small1976
A pollination network.
plotweb
Visualize a bipartite interaction matrix (e.g. a foodweb)
schemske1978
A pollination network.
kevan1970
A pollination network.
plotweb2
Visualize a tripartite interaction matrix (e.g. a tritrophic foodweb)
vazmasnc
A pollination network.
olesen2002flores
A pollination network.
extinction
Simulates extinction of a species from a bipartite network
discrepancy
Calculates discrepancy of a matrix
compart
Detects compartments
vazmasc
A pollination network.
mosquin1967
Pollination network.
vazquenc
A pollination network.
genweb
Generate a random bipartite web
vazarr
A pollination network.
visweb
Plotfunction to visualize a bipartite foodweb
memmott1999
Pollination network.
empty
Deletes empty rows and columns from a matrix.
elberling1999
No. of visits in a pollination web of arctic-alpine Sweden.
olesen2002aigrettes
A pollination network.
vazcer
A pollination network.
motten1982
A pollination network.
barrett1987
Individuals caught in a pollination web in boreal Canada.
vazquec
A pollination network.
slope.bipartite
Slope of extinction simulation
C.score
Calculates the (normalised) mean number of checkerboard combinations (C-score) in a matrix
functspec
Calculates the functional specialisation index
nodespec
Calculates the node-based specialisation index
shuffle.web
Shuffle web entries
null.t.test
Compares observed pattern to random webs.
togetherness
Calculates the number of identical co-presences and co-absences for species-on-islands
Safariland
Pollination web in Argentina.
V.ratio
Calculates the variance-ratio as suggested by Schluter (1984)
H2fun
Specialisation of a bipartite web.
vazllao
A pollination network.
dfun
Calculates standardised specialisation index d' (d prime) for each species in the lower trophic level of a bipartite network.
specieslevel
Calculate various indices for network properties at the species level
as.one.mode
Conversion of a network matrix
nestedness.corso
Calculates the (weighted) nestedness of a network according to the method proposed by Corso et al. (2008), with weighting option by Galeano et al. (2008).