moduleWeb-class

This class is the output of an application of the function computeModules(...) to a graph. It consists of the matrix representing the original graph which has been passed to computeModules(...) in order to compute modules, a matrix representing the same graph but permutated according to the identified modules, two vectors indicating the permutation of row and column indices, respectively, and information about the modules themselves.

classes

modules

moduleWeb

modularity

Bipartite provides functions to visualise webs and calculate a series of indices commonly used to describe pattern in ecological webs. It focuses on webs consisting of only two trophic levels, e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the webs topology. 

Carsten F Dormann

bipartite

Visualising bipartite networks and calculating some (ecological)
        indices.

moduleWeb-class function

encoding

Objects from the class should only be created by using the function computeModules(...).

Objects from the class

Objects of this class are used in following functions:listModuleInformation(moduleWebObject)printoutModuleInformation(moduleWebObject)plotModuleWeb(moduleWebObject, plotModules=TRUE, rank=FALSE, weighted=TRUE, displayAlabels=TRUE, displayBlabels=TRUE, labsize=1, plotsize=12, xlabel="", ylabel="", square.border="white", fromDepth=0, upToDepth=-1)

moduleWeb-class: Class "moduleWeb"

Description

Arguments

encoding

Objects from the class

Methods

Examples