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Fits a hyperbolic function to the extinction simulation of second.extinct.
slope.bipartite(object, plot.it = TRUE, ...)Returns one number, the exponent of the fitted hyperbolic model.
An object of class “bipartite”, usually generated by second.extinct.
Logical; want to see the graph?
Graphical parameters passed on to the plot command used for plotting, NOT to the curve command used for overlaying the curve.
Carsten F. Dormann
Function scales extinction sequences to values between 0 and 1 for each participant. The x-axis of the graph features the proportion of exterminated participants, while the y-axis depicts the proportion of secondary extinctions. Since these curves usually follow a hyperbolic function (see examples in Memmott et al. 2004), this is fitted to the data.
At present, only a function of type nls), i.e. without offset. While usually this
function provides very good fits, do check the graph and judge for yourself. Fitting this simple function makes its
parameter ‘a’ a measure of extinction vulnerability. The more gradual the secondary extinctions, the lower the absolute value of ‘a’. Or, phrased differently, large absolute values of ‘a’ indicate a very abrupt die-off, indicative of high initial redundancy in the network.
Memmott, J., Waser, N. M. and Price, M. V. (2004) Tolerance of pollination networks to species extinctions. Proceedings of the Royal Society B 271, 2605--2611
second.extinct for generating the required input object.
if (FALSE) {
data(Safariland)
ex <- second.extinct(Safariland, participant="lower", method="random", nrep=100,
details=FALSE)
slope.bipartite(ex)
}
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