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birdscanR (version 0.3.0)

Migration Traffic Rate Calculation Package for 'Birdscan MR1' Radars

Description

Extract data from 'Birdscan MR1' 'SQL' vertical-looking radar databases, filter, and process them to Migration Traffic Rates (#objects per hour and km) or density (#objects per km3) of, for example birds, and insects. Object classifications in the 'Birdscan MR1' databases are based on the dataset of Haest et al. (2021) ). Migration Traffic Rates and densities can be calculated separately for different height bins (with a height resolution of choice) as well as over time periods of choice (e.g., 1/2 hour, 1 hour, 1 day, day/night, the full time period of observation, and anything in between). Two plotting functions are also included to explore the data in the 'SQL' databases and the resulting Migration Traffic Rate results. For details on the Migration Traffic Rate calculation procedures, see Schmid et al. (2019) .

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Install

install.packages('birdscanR')

Monthly Downloads

219

Version

0.3.0

License

GPL-3

Issues

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Stars

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Maintainer

Birgen Haest

Last Published

July 5th, 2024

Functions in birdscanR (0.3.0)

getEchoValidationTable

Get a BirdScan echo validation table
getBatClassification

Get a BirdScan 'batClassification' table
getRadarTable

Get a BirdScan radar table
getEchoFeatures

Get BirdScan echo features
getProtocolTable

Get BirdScan protocol table
getManualVisibilityTable

Get manual visibility table
getCollectionTable

Get BirdScan collection table
filterEchoData

filterEchoData
filterProtocolData

filterProtocolData
getRfClassification

Get a BirdScan 'rfClassification' table
reclassToBats

integrate bat classification
loadManualBlindTimes

loadManualBlindTimes
getTimeBinsTable

Get BirdScan time bins table
mergeVisibilityAndManualBlindTimes

mergeVisibilityAndManualBlindTimes
plotLongitudinalMTR

plotLongitudinalMTR
manualBlindTimes

Example file on how to include manual blind times for your 'Birdscan MR1' database.
getVisibilityTable

Get BirdScan visibility table
getSiteTable

Get BirdScan site table
plotExploration

plotExploration
saveMTR

saveMTR
twilight

Get the nautical, civil, and solar dawn and dusk for a given timerange and locations.
savePlotToFile

savePlotToFile
computeMTR

computeMTR
computeObservationTime

computeObservationTime
QUERY

Query 'SQL' database
convertTimeZone

Converts timestamps from radar time zone to an user-defined time zone
addDayNightInfoPerEcho

addDayNightInfoPerEcho
computeDensity

computeDensity
classAbbreviations

Default class abbreviations table of the birdscanR package
createTimeBins

createTimeBins
extractDbData

Extract DB Data
filterData

filterData