getPotentialSwaps

Each entry corresponds to a regulator (miRNA, TF, other) and contains its target genes.

genesets

Percentage cutoff of minimal overlap between two miRNAs or TFs to be possible swap partner.

perc.overlap.cutoff

If TRUE, the swap partner are not output as characters, but as integer indices.

integer.id


Calculates for TF-/miRNA-target graph all potential swap partner.


Expression levels of mRNA molecules are regulated by
different processes, comprising inhibition or activation by
transcription factors and post-transcriptional degradation by
microRNAs. biRte uses regulatory networks of TFs, miRNAs and
possibly other factors, together with mRNA, miRNA and other
available expression data to predict the relative influence of
a regulator on the expression of its target genes. Inference is
done in a Bayesian modeling framework using
Markov-Chain-Monte-Carlo. A special feature is the possibility
for follow-up network reverse engineering between active
regulators.

Holger Froehlich

birte

Bayesian Inference of Regulatory Influence on Expression (biRte)

getPotentialSwaps function

Calculates for TF-/miRNA-target graph all potential swap partner.

Calculate swap partner for TF-/miRNA-target graph. This function is usually only called internally, but may be used to speed up repetitive calls to <code><a href="birteRun" rd-options="">birteRun</a></code>.


Calculate swap partner for TF-/miRNA-target graph. This function is usually only called internally, but may be used to speed up repetitive calls to <code><a rd-options="" href="/link/birteRun?package=birte&version=1.8.1" data-mini-rdoc="birte::birteRun">birteRun</a></code>.


getPotentialSwaps: Calculate swap partner for TF-/miRNA-target graph. This function is usually only called internally, but may be used to speed up repetitive calls to `birteRun`.

Description

Usage

Arguments

Value

Examples