format_jive_traits

a dataframe with species names in the first column and individual trait values in the second columns

This function takes a dataframe with indivdual observations ans species names and returns a traits matrix to to parse into <code><a rd-options="" href="/link/make_jive?package=bite&version=0.3" data-mini-rdoc="bite::make_jive">make_jive</a></code> function

Contains the JIVE (joint inter and intra-specific model of variance evolution) model and other Bayesian models aimed at understanding trait evolution. The goal of the package is to join phylogenetic comparative models (PCM) that tend to integrate various type of data (individual observations, environmental data, fossil data) into a hierarchical Bayesian framework. It contains various PCMs as well as functions to join those models into a hierarchical Bayesian framework in a flexible and user friendly way. It contains various Markov chain Monte-Carlo (MCMC) algorithms, methods for model comparison and many plotting function for pre- and post-processing data visualization. Finally, this package integrates functions allowing bridges between 'R' and the 'BEAST2' implementations of PCMs. Kostikova A, Silvestro D, Pearman PB, Salamin N (2016) <doi:10.1093/sysbio/syw010>. Gaboriau T, Mendes FK, Joly S, Silvestro D, Salamin N (in prep).

Theo Gaboriau

bite

Bayesian Integrative Models of Trait Evolution

Anna Kostikova

Daniele Silvestro

Sacha Laurent

Martha Serrano

Glenn Litsios

Wim Hordijk

Simon Joly

Nicolas Salamin

format_jive_traits function

This function takes a dataframe with indivdual observations ans species names and returns a traits matrix to to parse into <code><a rd-options='' href='make_jive'>make_jive</a></code> function

Format traits matrix to parse into <code><a rd-options='' href='make_jive'>make_jive</a></code> function — format_jive_traits

Format traits matrix to parse into <code><a rd-options='' href='make_jive'>make_jive</a></code> function

Format traits matrix to parse into <code><a rd-options="" href="/link/make_jive?package=bite&version=0.3" data-mini-rdoc="bite::make_jive">make_jive</a></code> function

format_jive_traits: Format traits matrix to parse into `make_jive` function

Description

Usage

Arguments

Value