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bkmrhat (version 0.1.16)

Parallel Chain Tools for Bayesian Kernel Machine Regression

Description

Bayesian kernel machine regression (from the 'bkmr' package) is a Bayesian semi-parametric generalized linear model approach under identity and probit links. There are a number of functions in this package that extend Bayesian kernel machine regression fits to allow multiple-chain inference and diagnostics, which leverage functions from the 'future', 'rstan', and 'coda' packages. Reference: Bobb, J. F., Henn, B. C., Valeri, L., & Coull, B. A. (2018). Statistical software for analyzing the health effects of multiple concurrent exposures via Bayesian kernel machine regression. ; .

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Version

Install

install.packages('bkmrhat')

Monthly Downloads

392

Version

0.1.16

License

GPL (>= 3)

Maintainer

Alexander Keil

Last Published

September 16th, 2020

Functions in bkmrhat (0.1.16)

PredictorResponseUnivar_parallel

Univariate predictor response summary by chain
comb_bkmrfits

Combine multiple BKMR chains
SingVarRiskSummaries_parallel

Single variable summary by chain
as.mcmc.list.bkmrfit.list

Convert multi-chain bkmrfit to mcmc.list for coda MCMC diagnostics
ExtractPIPs_parallel

Posterior inclusion probabilities by chain
SamplePred_parallel

Posterior samples of E(Y|h(Z),X,beta) by chain
OverallRiskSummaries_parallel

Overall summary by chain
as.mcmc.bkmrfit

Convert bkmrfit to mcmc object for coda MCMC diagnostics
PredictorResponseBivar_parallel

Bivariate predictor response by chain
kmbayes_diag

MCMC diagnostics using rstan
kmbayes_parallel

Run multiple BKMR chains in parallel
predict.bkmrfit

Posterior mean/sd predictions