blaster

blaster-package

Implementation of an efficient BLAST-like sequence comparison algorithm, written in 'C++11' and using native R datatypes. Blaster is based on 'nsearch' - Schmid et al (2018) tools:::Rd_expr_doi("10.1101/399782").

internal

Implementation of an efficient BLAST-like sequence
comparison algorithm, written in 'C++11' and using
native R datatypes. Blaster is based on 'nsearch' -
Schmid et al (2018) <doi:10.1101/399782>.

Manu Tamminen

Native R Implementation of an Efficient BLAST-Like Algorithm

Timothy Julian

Aditya Jeevennavar

Steven Schmid

blaster-package function

Maintainer: Manu Tamminen <a href="/link/mavatam%40utu.fi?package=blaster&version=1.0.7" data-mini-rdoc="blaster::mavatam@utu.fi">mavatam@utu.fi</a> (<a href="https://orcid.org/0000-0001-5891-7653">ORCID</a>)
Authors:<ul>
<li>Timothy Julian <a href="/link/tim.julian%40eawag.ch?package=blaster&version=1.0.7" data-mini-rdoc="blaster::tim.julian@eawag.ch">tim.julian@eawag.ch</a> (<a href="https://orcid.org/0000-0003-1000-0306">ORCID</a>)</li>
<li>Aditya Jeevennavar <a href="/link/aditya.a.jeevannavar%40utu.fi?package=blaster&version=1.0.7" data-mini-rdoc="blaster::aditya.a.jeevannavar@utu.fi">aditya.a.jeevannavar@utu.fi</a> (<a href="https://orcid.org/0000-0002-0737-7316">ORCID</a>)</li>
<li>Steven Schmid <a href="/link/stevschmid%40gmail.com?package=blaster&version=1.0.7" data-mini-rdoc="blaster::stevschmid@gmail.com">stevschmid@gmail.com</a></li>
</ul>

Author

blaster: Native R Implementation of an Efficient BLAST-Like Algorithm — blaster-package

Maintainer: Manu Tamminen <a href='mailto:mavatam@utu.fi'>mavatam@utu.fi</a> (<a href='https://orcid.org/0000-0001-5891-7653'>ORCID</a>)
Authors:<ul>
<li>Timothy Julian <a href='mailto:tim.julian@eawag.ch'>tim.julian@eawag.ch</a> (<a href='https://orcid.org/0000-0003-1000-0306'>ORCID</a>)</li>
<li>Aditya Jeevennavar <a href='mailto:aditya.a.jeevannavar@utu.fi'>aditya.a.jeevannavar@utu.fi</a> (<a href='https://orcid.org/0000-0002-0737-7316'>ORCID</a>)</li>
<li>Steven Schmid <a href='mailto:stevschmid@gmail.com'>stevschmid@gmail.com</a></li>
</ul>

blaster-package: blaster: Native R Implementation of an Efficient BLAST-Like Algorithm

Description

Arguments

Author

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