blima (version 1.6.0)

plotBackgroundImageAfterCorrection: Plot background image after correction

Description

This function plots image of background distribution versus to foreground after background subtraction.

Usage

plotBackgroundImageAfterCorrection(b, index, channelForeground = "GrnF",  channelBackground = "GrnB", SDMultiple = 3, includePearson = FALSE)

Arguments

b

Single beadLevelData object.

index

Index of spot to generate.

channelForeground

Name of channel of foreground.

channelBackground

Name of channel of background.

SDMultiple

Correct on this level.

includePearson

Include Pearson corelation.

Examples

if(require("blimaTestingData") && interactive())
{
    #Write background images after correction. This function prints graph for condition D4. Call dev.off() to close.
    data(blimatesting)
    p = pData(blimatesting[[2]]@experimentData$phenoData)
    index = base::match("D4", p$Name)
    plotBackgroundImageAfterCorrection(blimatesting[[2]], index)
}else
{
    print("To run this example, please install blimaTestingData package from bioconductor by running biocLite('blimaTestingData').");
}