An all-encompassing R toolkit designed to streamline the
process of calling various bioinformatics software and then performing data
analysis and visualization in R. With 'blit', users can easily integrate a
wide array of bioinformatics command line tools into their workflows,
leveraging the power of R for sophisticated data manipulation and graphical
representation.

Yun Peng

blit

Bioinformatics Library for Integrated Tools

Shixiang Wang

Jennifer Lu

Li Song

X. Shirley Liu

arg function

<dl><dt>tag</dt>
<dd>A string specifying argument tag, like "-i", "-o".</dd>
<dt>value</dt>
<dd>Value passed to the argument.</dd>
<dt>indicator</dt>
<dd>A logical value specifying whether value should be an
indicator of tag. If TRUE, logical value will explain the set or unset of
tag.</dd>
<dt>lgl2int</dt>
<dd>A logical value indicates whether transfrom value <code>TRUE</code> to
<code>1</code> or <code>FALSE</code> to <code>0</code>. If <code>TRUE</code>, format will always be set to <code>"%d"</code>.</dd>
<dt>format</dt>
<dd>The format of the value, details see <code><a href="/link/sprintf?package=blit&version=0.1.0" data-mini-rdoc="blit::sprintf">sprintf</a></code>.</dd>
<dt>sep</dt>
<dd>A character string used to separate "tag" and "value", usually <code>" "</code> or <code>"="</code>.</dd></dl>

Arguments

Deliver arguments of command — arg

<dl>

<dt>tag</dt>
<dd>A string specifying argument tag, like "-i", "-o".</dd>


<dt>value</dt>
<dd>Value passed to the argument.</dd>


<dt>indicator</dt>
<dd>A logical value specifying whether value should be an
indicator of tag. If TRUE, logical value will explain the set or unset of
tag.</dd>


<dt>lgl2int</dt>
<dd>A logical value indicates whether transfrom value <code>TRUE</code> to
<code>1</code> or <code>FALSE</code> to <code>0</code>. If <code>TRUE</code>, format will always be set to <code>"%d"</code>.</dd>


<dt>format</dt>
<dd>The format of the value, details see <code><a href='https://rdrr.io/r/base/sprintf.html'>sprintf</a></code>.</dd>


<dt>sep</dt>
<dd>A character string used to separate "tag" and "value", usually <code>" "</code> or <code>"="</code>.</dd>

</dl>

arg: Deliver arguments of command

Description

Usage

Value

Arguments