seqkit

An all-encompassing R toolkit designed to streamline the
process of calling various bioinformatics software and then performing data
analysis and visualization in R. With 'blit', users can easily integrate a
wide array of bioinformatics command line tools into their workflows,
leveraging the power of R for sophisticated data manipulation and graphical
representation.

Yun Peng

blit

Bioinformatics Library for Integrated Tools

Shixiang Wang

Jennifer Lu

Li Song

X. Shirley Liu

seqkit function

<dl><dt>subcmd</dt>
<dd>Sub-Command of seqkit.</dd>
<dt>...</dt>
<dd>&lt;<a href="https://rlang.r-lib.org/reference/dyn-dots.html">dynamic dots</a>&gt; Additional arguments passed to <code>seqkit subcmd</code> command. Empty arguments are automatically trimmed. If a single argument, such as a file path, contains spaces, it must be quoted, for example using <code><a href="/link/shQuote?package=blit&version=0.1.0" data-mini-rdoc="blit::shQuote">shQuote</a></code>. Details see: <code>cmd_help(seqkit subcmd())</code>.</dd>
<dt>seqkit</dt>
<dd>A string of path to <code>seqkit</code> command.</dd></dl>

Arguments

Run seqkit — seqkit

<dl>

<dt>subcmd</dt>
<dd>Sub-Command of seqkit.</dd>


<dt>...</dt>
<dd>&lt;<a href='https://rlang.r-lib.org/reference/dyn-dots.html'>dynamic dots</a>&gt; Additional arguments passed to <code>seqkit subcmd</code> command. Empty arguments are automatically trimmed. If a single argument, such as a file path, contains spaces, it must be quoted, for example using <code><a href='https://rdrr.io/r/base/shQuote.html'>shQuote</a></code>. Details see: <code>cmd_help(seqkit subcmd())</code>.</dd>


<dt>seqkit</dt>
<dd>A string of path to <code>seqkit</code> command.</dd>

</dl>

Run seqkit

seqkit: Run seqkit

Description

Usage

Value

Arguments

See Also