Learn R Programming

bmass (version 1.0.3)

Bayesian Multivariate Analysis of Summary Statistics

Description

Multivariate tool for analyzing genome-wide association study results in the form of univariate summary statistics. The goal of 'bmass' is to comprehensively test all possible multivariate models given the phenotypes and datasets provided. Multivariate models are determined by assigning each phenotype to being either Unassociated (U), Directly associated (D) or Indirectly associated (I) with the genetic variant of interest. Test results for each model are presented in the form of Bayes factors, thereby allowing direct comparisons between models. The underlying framework implemented here is based on the modeling developed in "A Unified Framework for Association Analysis with Multiple Related Phenotypes", M. Stephens (2013) .

Copy Link

Version

Install

install.packages('bmass')

Monthly Downloads

169

Version

1.0.3

License

GPL (>= 3)

Issues

Pull Requests

Stars

Forks

Maintainer

Michael Turchin

Last Published

May 17th, 2019

Functions in bmass (1.0.3)

bmass

Bayesian multivariate analysis of summary statistics (bmass)
bmass_SimulatedData1

bmass Simulated Dataset 1
bmass_TestSigSNPs

bmass Test GWAS SNPs
bmass_SimulatedData2

bmass Simulated Dataset 2
GetTopModelsPerSNPViaPosteriors

Get Top Multivariate Models
bmass_SimulatedSigSNPs

bmass Simulated GWAS SNPs
GetMarginalPosteriors

Get Marginal {U,D,I} Posteriors
GetModelPriorMatrix

Get Model Prior Matrix
GlobalLipids2013.GWASsnps

GlobalLipids2013 GWAS SNPs
bmass_TestData1

bmass Test Dataset 1
bmass_TestData2

bmass Test Dataset 2