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bnRep (version 0.0.3)

kosterhavet: kosterhavet Bayesian Network

Description

A Bayesian network to inform the management of key species in Kosterhavet National Park under contrasting storylines of environmental change.

Arguments

Value

An object of class bn.fit. Refer to the documentation of bnlearn for details.

Format

A discrete Bayesian network to predict the consequences of human activities for coastal ecosystems and identify areas for directed abatement measures. Probabilities were given within the referenced paper (missing probabilities were given a uniform distribution). The vertices are:

LeisureBoating

Boats per year in marinas and natural harbors (for natural harbors only high season from Jul. 01 to Aug. 07 considered) within Kosterhavet National Park (Low, Medium, High);

TrawlingFrequency

Number of trawling events per area and year within Kosterhavet National Park (Low, High);

MusselCultivation

Extent of oysters and blue mussels farms within Kosterhavet National Park (Low, Medium, High, Very high);

DevelopedLand

Proportion of developed land in the catchments of marine water bodies (Low, High);

AgriculturalLand

Proportion of agricultural land in the catchments of marine water bodies (Low, Medium, High);

TNExchange

Annual net total nitrogen exchange between marine water bodies (Low, Medium, High);

TPExchange

Annual net phosphorus exchange between marine water bodies (Low, Medium, High);

RadiativeForcing

Scenarios of radiative forcing till the end of 2100 (Current, RF45, RF85);

Precipitation

Annual mean precipitation on land within the catchments of marine water bodies (Low, High);

Discharge

Sum of discharges from rivers and runoff from land into marine water bodies (Low, Medium, High);

Wind

Maximum summer (Jun.-Aug.) offshore wind speed (Low, Medium, High);

DIN

Mean winter (Dec.-Feb.) dissolved inorganic nitrogen concentration in surface waters (Low, Medium, High);

DIP

Mean winter (Dec.-Feb.) dissolved inorganic phosphorus concentration in surface waters (Low, Medium, High);

POM

Annual mean concentration POM (POC - chl-a) (Low, High);

NutrientEnrichmentRisk

Dependent on combination of states of DIN, DIP and POM (Low, Medium, High);

Noise

Noise from leisure boats (Low, Medium, High);

AnchorDamageRisk

Risk of seafloor in shallow bays being impacted by anchor damage of leisure boats (Low, High);

WaterTemperatureShallow

Mean summer (Jun.- Aug.) sea surface temperature - depth < 10m (Low, Medium, High);

Transparency

Mean summer (Jun-Aug) Secchi depth (Low, Medium, High);

OxygenShallow

Lowest percentile of summer (Jun.-Aug.) oxygen concentration of surface water - depth < 10m (Low, Medium, High);

OxygenDeep

Lowest percentile of summer (Jun.-Aug.) oxygen concentration of surface water - depth < 60m (Low, Medium, High);

Turbidity

Amount of dry weight (Low, Medium, High);

BottomSubstrate

Type of bottom substrate (Soft, Hard);

SeafloorDisturbance

Benthic quality index (Low, High);

WaterTemperatureDeep

Mean summer (Jun.- Aug.) sea surface temperature - depth < 60m (Low, High);

TNLoad

Annual load of total nitrogen to marine water bodies (Low, Medium, High);

TPLoad

Annual load of total phosphorus to marine water bodies (Low, Medium, High);

SedimentLoad

Annual sediment load to marine water bodies (Low, Medium, High);

HabitatQuality

Dependent on combination of states of oxygen (deep), turbidity (deep), seafloor disturbance (Low, Medium, High);

Cod

Catch per unit effor (Low, Medium, High);

IntermediateFishPredators

Abundance of intermediate fish predators (e.g. Gobiidae, three-spined stickleback) (Low, Medium, High);

Mesograzers

Abundance of mesograzers (e.g. amphipods, isopods)(Low, Medium, High);

FilamentousAlgae

Maximum summer (May-Aug.) cover of filamentous algae in eelgrass meadows (Low, Medium, High);

Phytoplankton

Mean summer (Jun.-Aug.) chl-a concentration (Low, Medium, High);

Zooplankton

Strongly responds to phytoplankton with weaker links to temperature and oxygen concentration (Low, Medium, High);

Prey

Dependent on combination of states of zooplankton and seafloor disturbance (Low, Medium, High);

Eelgrass

Extent of eelgrass meadows within Kosterhavet National Park (Decrease, No change, Increase);

NorthernShrimp

Catch per unit effort (Decrease, No change, Increase);

References

Rettig, K., Hansen, A. S., Obst, M., Hering, D., & Feld, C. K. (2023). A Bayesian network to inform the management of key species in Kosterhavet National Park under contrasting storylines of environmental change. Estuarine, Coastal and Shelf Science, 280, 108158.