salmonella2

Patterns of antimicrobial resistance in Salmonella isolates from fattening pigs in Spain.

A collection of Bayesian networks (discrete, Gaussian, and conditional linear Gaussian) collated from recent academic literature. The 'bnRep_summary' object provides an overview of the Bayesian networks in the repository and the package documentation includes details about the variables in each network. A Shiny app to explore the repository can be launched with 'bnRep_app()' and is available online at <https://manueleleonelli.shinyapps.io/bnRep>. Reference: 'M. Leonelli' (2025) <doi:10.1016/j.neucom.2025.129502>.

Manuele Leonelli

bnRep

A Repository of Bayesian Networks from the Academic Literature

salmonella2 function

A discrete Bayesian network to show the existence of dependencies between resistance to antimicrobials. Probabilities were given within the referenced paper. The vertices are (s stands for susceptible, r for resistant):<dl>
<dt>AMP</dt>
<dd>Ampicillin (s, r);</dd><dt>CAZ</dt>
<dd>Ceftazidime (s, r);</dd><dt>CHL</dt>
<dd>Chloramphenicol (s, r);</dd><dt>CIP</dt>
<dd>Ciprofloxacin (s, r);</dd><dt>CTX</dt>
<dd>Cefotaxime (s, r);</dd><dt>GEN</dt>
<dd>Gentamicin (s, r);</dd><dt>NAL</dt>
<dd>Nalidixic acid (s, r);</dd><dt>SMX</dt>
<dd>Sulfamethoxazole (s, r);</dd><dt>TET</dt>
<dd>Tetracycline (s, r);</dd><dt>TMP</dt>
<dd>Trimethoprimn (s, r);</dd>
</dl>

Format

salmonella Bayesian Networks — salmonella2

A discrete Bayesian network to show the existence of dependencies between resistance to antimicrobials. Probabilities were given within the referenced paper. The vertices are (s stands for susceptible, r for resistant):<dl>
<dt>AMP</dt>
<dd>Ampicillin (s, r);</dd>

<dt>CAZ</dt>
<dd>Ceftazidime (s, r);</dd>

<dt>CHL</dt>
<dd>Chloramphenicol (s, r);</dd>

<dt>CIP</dt>
<dd>Ciprofloxacin (s, r);</dd>

<dt>CTX</dt>
<dd>Cefotaxime (s, r);</dd>

<dt>GEN</dt>
<dd>Gentamicin (s, r);</dd>

<dt>NAL</dt>
<dd>Nalidixic acid (s, r);</dd>

<dt>SMX</dt>
<dd>Sulfamethoxazole (s, r);</dd>

<dt>TET</dt>
<dd>Tetracycline (s, r);</dd>

<dt>TMP</dt>
<dd>Trimethoprimn (s, r);</dd>


</dl>

salmonella2: salmonella Bayesian Networks

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References