a data frame containing the variables in the model.

whitelist

a data frame with two columns (optionally labeled "from"
and "to"), containing a set of arcs to be included in the graph.

blacklist

a data frame with two columns (optionally labeled "from"
and "to"), containing a set of arcs not to be included in the graph.

mi

a character string, the estimator used for the pairwise (i.e.
unconditional) mutual information coefficients in the ARACNE and Chow-Liu
algorithms. Possible values are mi (discrete mutual information)
and mi-g (Gaussian mutual information).

debug

a boolean value. If TRUE a lot of debugging output is
printed; otherwise the function is completely silent.

Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R,
Califano A (2006). "ARACNE: An Algorithm for the Reconstruction of
Gene Regulatory Networks in a Mammalian Cellular Context". BMC
Bioinformatics, 7(Suppl 1):S7.