refAnnots

A <code>data.frame</code> containing the source file and cell type for every cell in
<code><a rd-options="" href="/link/refPhenoMat?package=bodenmiller&version=0.1.1" data-mini-rdoc="bodenmiller::refPhenoMat">refPhenoMat</a></code> and <code><a rd-options="" href="/link/refFuncMat?package=bodenmiller&version=0.1.1" data-mini-rdoc="bodenmiller::refFuncMat">refFuncMat</a></code>. See
<a href="https://www.nature.com/articles/nbt.2317/">Bodenmiller et al 2012</a>
for details.

datasets

This data package contains a subset of the Bodenmiller et al, Nat Biotech 2012 dataset for testing single cell, high dimensional analysis and visualization methods.

Yann Abraham

bodenmiller

Profiling of Peripheral Blood Mononuclear Cells using CyTOF

Bernd Bodenmiller

refAnnots function

a data.frame with 15792 rows and 2 variables:<ul>
<li>Sourcethe name of the source (fcs) file</li>
<li>Cellsthe cell type for the corresponding row in <code><a rd-options="" href="/link/refPhenoMat?package=bodenmiller&version=0.1.1" data-mini-rdoc="bodenmiller::refPhenoMat">refPhenoMat</a></code>
 or <code><a rd-options="" href="/link/refFuncMat?package=bodenmiller&version=0.1.1" data-mini-rdoc="bodenmiller::refFuncMat">refFuncMat</a></code></li>
</ul>

Format

A <code>data.frame</code> containing the source file and cell type for every cell in
<code><a rd-options='' href='refPhenoMat'>refPhenoMat</a></code> and <code><a rd-options='' href='refFuncMat'>refFuncMat</a></code>. See
<a href='https://www.nature.com/articles/nbt.2317/'>Bodenmiller et al 2012</a>
for details.

Reference Annotation — refAnnots

a data.frame with 15792 rows and 2 variables:<ul>
<li>Sourcethe name of the source (fcs) file</li>
<li>Cellsthe cell type for the corresponding row in <code><a rd-options='' href='refPhenoMat'>refPhenoMat</a></code>
 or <code><a rd-options='' href='refFuncMat'>refFuncMat</a></code></li>
</ul>

refAnnots: Reference Annotation

Description

Usage

Arguments

Format