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bold (version 0.3.0)

Interface to Bold Systems API

Description

A programmatic interface to the Web Service methods provided by Bold Systems for genetic barcode data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.

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Install

install.packages('bold')

Monthly Downloads

237

Version

0.3.0

License

MIT + file LICENSE

Issues

5

Pull Requests

1

Stars

20

Forks

11

Maintainer

Scott Chamberlain

Last Published

September 16th, 2015

Functions in bold (0.3.0)

bold_specimens

Search BOLD for specimens.
bold_trace

Get BOLD trace files
bold_seq

Search BOLD for sequences.
bold_seqspec

Get BOLD specimen + sequence data.
bold_tax_id

Search BOLD for taxonomy data by BOLD ID.
bold-package

bold: A programmatic interface to the Barcode of Life data.
sequences

List of 3 nucleotide sequences to use in examples for the bold_identify function
bold_identify

Search for matches to sequences against the BOLD COI database.
bold_tax_name

Search BOLD for taxonomy data by taxonomic name.