analyze_moc_datasets

Performs ensemble clustering analysis on multiple datasets using
different clustering methods and compares their performance.

Implementation of the bootstrapping approach for the estimation of clustering stability and its application in estimating the number of clusters, as introduced by Yu et al (2016)<doi:10.1142/9789814749411_0007>. Implementation of the non-parametric bootstrap approach to assessing the stability of module detection in a graph, the extension for the selection of a parameter set that defines a graph from data in a way that optimizes stability and the corresponding visualization functions, as introduced by Tian et al (2021) <doi:10.1002/sam.11495>. Implemented out-of-bag stability estimation function and k-select Smin-based k-selection function as introduced by Liu et al (2022) <doi:10.1002/sam.11593>. Implemented ensemble clustering method based-on k-means clustering method, spectral clustering method and hierarchical clustering method.

Tianmou Liu

bootcluster

Bootstrapping Estimates of Clustering Stability

Han Yu

Mingmei Tian

analyze_moc_datasets function

<dl><dt>datasets</dt>
<dd>List of datasets to analyze</dd>
<dt>selected</dt>
<dd>Indices of datasets to analyze</dd>
<dt>n_ref</dt>
<dd>Number of reference distributions (default: 3)</dd>
<dt>B</dt>
<dd>Number of bootstrap samples (default: 100)</dd>
<dt>plot</dt>
<dd>Whether to generate plots (default: TRUE)</dd>
<dt>plot_file</dt>
<dd>Output file for plots (default: NULL)</dd></dl>

Arguments

Multi-Method Ensemble Clustering Analysis for Multiple-Objective Clustering (MOC) Datasets — analyze_moc_datasets

<dl>

<dt>datasets</dt>
<dd>List of datasets to analyze</dd>


<dt>selected</dt>
<dd>Indices of datasets to analyze</dd>


<dt>n_ref</dt>
<dd>Number of reference distributions (default: 3)</dd>


<dt>B</dt>
<dd>Number of bootstrap samples (default: 100)</dd>


<dt>plot</dt>
<dd>Whether to generate plots (default: TRUE)</dd>


<dt>plot_file</dt>
<dd>Output file for plots (default: NULL)</dd>

</dl>

analyze_moc_datasets: Multi-Method Ensemble Clustering Analysis for Multiple-Objective Clustering (MOC) Datasets

Description

Usage

Value

Arguments