This function can be used to plot bootnet results by plotting all bootstrapped statistics as line or by plotting confidence intervals.
# S3 method for bootnet
plot(x, statistics,
plot, CIstyle = c("default","SE","quantiles"),
rank = FALSE, sampleColor = "darkred", samplelwd = 1, bootColor = "black",
bootAlpha = 0.01, bootlwd = 0.9, areaAlpha = 0.1,
order = c("id", "sample", "mean"), decreasing = TRUE, perNode = FALSE,
legendNcol = 2, labels=TRUE, legend = TRUE,subsetRange = c(100,0),
area = !perNode, alpha = 0.05, onlyNonZero = FALSE, differenceShowValue,
differenceEdgeColor = TRUE, verbose = TRUE, panels = TRUE, ...)A bootnet object
The types of statistics to plot. c("intercept", "strength", "closeness", "betweenness") plots all nodewise statistics whereas c("edge","distance") plots all pairwise statistics. Defaults to "edge" for regular bootstrap and c("strength", "closeness", "betweenness") for node and person drop bootstrap.
Character string indicating what to plot. Can be "area" to produce a graph with the area indicating the confidence region, or "difference" producing a plot showing significant differences. Other options are "line" and "interval", which are currently unstable and not recommended to use.
Style of CIs to construct. "SE" shows the sample statistic plus and minus two times the standard deviation of bootstraps, and "quantiles" the area between the 2.5th and 97.5th quantile. Defaults to "SE" for strength and betweenness and "quantiles" otherwise
Logical, should plots show rank of statistics instead of statistics?
Color of the original sample line
Line width of the original sample line
Color of the bootstrap lines
Alpha of the bootstrap lines
Line width of the bootstrap lines
Alpha of the area
String indicating how to order nodes. "id" will order nodes based on their name, "mean" will order nodes based on the average bootstrapped value of the first statistic in statistics, and "sample" will order the nodes as done in "mean" but orders ties based on their sample value.
Logical indicating if the ordering is decreasing or increasing.
Logical, should centrality estimates per node be plotted instead of correlation with original parameter. Only used in node and person drop bootstrap.
Number of columns in the legend if perNode = TRUE.
Logical, should labels be plotted?
Logical, should the legend be plotted?
Range in percentages of the x-axis in node and person drop plots.
Logical, should the confidence area be plotted?
Signifiance level used in plot = "difference".
Logical used when plot = "difference", statistics = "edge", should only edges be included that were nonzero in the estimated network structure?
Logical used when plot = "difference". Should values be shown in the diagonal of the difference plot?
Logical used when plot = "difference", statistics = "edge". Should diagonal blocks be colored according to default edge colors?
Should expected alpha be printed?
Logical, should panel titles be printed?
Not used.
A ggplot2 object.