bqtl (version 1.0-3)

adjust.linear.bayes: Use Laplace Approximations to improve linear approximations to the posterior

Description

The approximation provided by linear.bayes can be improved by performing Laplace approximations. This function is a development version of a wrapper to do that for all of the returned by linear.bayes.

Usage

adjust.linear.bayes(lbo, ana.obj=lbo$call$ana.obj, ...)

Arguments

lbo

The object returned by linear.bayes

ana.obj

The analysis.object used to create lbo. This need not be given explicitly, iff the original version is in the search path.

...

currently unused

Value

• A list of class "adjust.linear.bayes" containing:
• odds
  A vector, typically of length k giving the odds for models of size 1, 2, ..., k under a uniform posterior relative to a model with no genes.
• loc.posterior
  The marginal posterior probabilities by locus
• coefficients
  The marginal posterior means of the coefficients
• one.gene.adj
  Results of fits for one gene models
• n.gene.adj
  Results of fits for modles with more than one gene
• call
  the call to adjust.linear.bayes

See Also

linear.bayes