swap

The result of <code><a href="/link/make.varcov?package=bqtl&version=1.0-3" rd-options="" data-mini-rdoc="bqtl::make.varcov">make.varcov</a></code>

varcov

Vector of
    numerical indexes of <code>ana.obj$reg.names</code> telling which
    variables to start in the model. The first of these is immediately
    removed, so it is merely a placeholder.  The number of genes in the
    model is therefore <code>k <</code>

invars

Scalar or vector with <code>nrow(varcov$var.x)</code> elements;
    the 'ridge' parameters for the independent variables - larger values
    imply more shrinkage or a more concentrated prior for the regresion
    coefficients.

rparm

How many cycles (of <code>k</code> samples each) to perform.

nreps

An <code>analysis.object</code> --- see <a href="/link/make.analysis.obj?package=bqtl&version=1.0-3" rd-options="" data-mini-rdoc="bqtl::make.analysis.obj">make.analysis.obj</a>

ana.obj

Additional arguments override the default choices of
    candidate loci (<code>locs</code>), prior for locus (<code>locs.prior</code>),
    or method specified by <code>ana.obj</code>. Also, the default prior for
    model (<code>combo.prior</code> when <

Given a k-gene model as a starting point, one gene is deleted and
another is sampled in its place. This is done using an approximation to
the posterior. Then another gene is deleted and another sampled,...

QTL mapping toolkit for inbred crosses and
 recombinant inbred lines. Includes maximum likelihood and Bayesian tools.

swap: MCMC sampling of multigene models

Description

Usage

Arguments