little.map.frame

The <code>little.map.frame</code> data frame has 50 rows and 9 columns that
describe the marker map of <code>little.map.dx</code> in the format
produced by <code>make.map.frame</code>. <code>little.map.dx</code> has the
 minimal data needed to construct this.

datasets

QTL mapping toolkit for inbred crosses and recombinant
inbred lines. Includes maximum likelihood and Bayesian tools.

Charles C Berry

bqtl

Bayesian QTL Mapping Toolkit

little.map.frame function

This data frame contains the following columns:<dl>
<dt>marker.name</dt>
<dd>a factor with levels
<code>m.1</code> 
<code>m.2</code> 
...
<code>m.50</code></dd><dt>cM</dt>
<dd>a vector of locations</dd><dt>prior</dt>
<dd>weights to be used in sampling and Bayesian computations</dd><dt>pos.type</dt>
<dd>a factor with levels
<code>left</code>
<code>right</code> 
<code>center</code></dd><dt>is.marker</dt>
<dd>always <code>TRUE</code> for these data</dd><dt>pos.plot</dt>
<dd>a vector of plotting positions</dd><dt>lambda</dt>
<dd>transformed recombination fractions</dd><dt>locus</dt>
<dd>an abbreviated locus name</dd><dt>chr.num</dt>
<dd>the chromosome number 1, 2, 3, 4, or 5.</dd>
</dl>

Format

Package of Simulated Marker Map Information — little.map.frame

This data frame contains the following columns:<dl>
<dt>marker.name</dt>
<dd>a factor with levels
<code>m.1</code> 
<code>m.2</code> 
...
<code>m.50</code></dd>

<dt>cM</dt>
<dd>a vector of locations</dd>

<dt>prior</dt>
<dd>weights to be used in sampling and Bayesian computations</dd>

<dt>pos.type</dt>
<dd>a factor with levels
<code>left</code>
<code>right</code> 
<code>center</code></dd>

<dt>is.marker</dt>
<dd>always <code>TRUE</code> for these data</dd>

<dt>pos.plot</dt>
<dd>a vector of plotting positions</dd>

<dt>lambda</dt>
<dd>transformed recombination fractions</dd>

<dt>locus</dt>
<dd>an abbreviated locus name</dd>

<dt>chr.num</dt>
<dd>the chromosome number 1, 2, 3, 4, or 5.</dd>


</dl>

little.map.frame: Package of Simulated Marker Map Information

Description

Usage

Arguments

Format