make.location.prior

Uses the map distances as a means of assigning a prior for chromosomal
 location. Basically, this function attempts to assign equal weight
 according to the spacing or markers and 'virtual' markers.

utilities

QTL mapping toolkit for inbred crosses and recombinant
inbred lines. Includes maximum likelihood and Bayesian tools.

Charles C Berry

bqtl

Bayesian QTL Mapping Toolkit

make.location.prior function

<dl> <dt>x</dt>
<dd>\(x = e^{-mgd}\) ,where mgd is the map distance in Morgans</dd> <dt>add.2.end</dt>
<dd>How many Morgans to extend the first and last
 interval on each chromosome</dd> <dt>normalize</dt>
<dd>If TRUE, let the result sum to 1.0</dd></dl>

Arguments

Charles C. Berry, <a href="/link/cberry%40ucsd.edu?package=bqtl&version=1.0-39" data-mini-rdoc="bqtl::cberry@ucsd.edu">cberry@ucsd.edu</a>

Author

Provide a default prior — make.location.prior

<dl>

 <dt>x</dt>
<dd>\(x = e^{-mgd}\) ,where mgd is the map distance in Morgans</dd>

 <dt>add.2.end</dt>
<dd>How many Morgans to extend the first and last
 interval on each chromosome</dd>

 <dt>normalize</dt>
<dd>If TRUE, let the result sum to 1.0</dd>

</dl>

Charles C. Berry, <a href='mailto:cberry@ucsd.edu'>cberry@ucsd.edu</a>

make.location.prior: Provide a default prior

Description

Usage

Value

Arguments

Author