bqtl (version 1.0-5)

adjust.linear.bayes: Use Laplace Approximations to improve linear approximations to the posterior

Description

The approximation provided by linear.bayes can be improved by performing Laplace approximations. This function is a development version of a wrapper to do that for all of the returned by linear.bayes.

Usage

adjust.linear.bayes(lbo, ana.obj=lbo$call$ana.obj, ...)

Arguments

lbo

The object returned by linear.bayes

ana.obj

The analysis.object used to create lbo. This need not be given explicitly, iff the original version is in the search path.

...

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Value

• A list of class "adjust.linear.bayes" containing:
• odds
  A vector, typically of length k giving the odds for models of size 1, 2, ..., k under a uniform posterior relative to a model with no genes.
• loc.posterior
  The marginal posterior probabilities by locus
• coefficients
  The marginal posterior means of the coefficients
• one.gene.adj
  Results of fits for one gene models
• n.gene.adj
  Results of fits for modles with more than one gene
• call
  the call to adjust.linear.bayes

See Also

linear.bayes