bqtl (version 1.0-5)

summary.swap: Summarize Gibbs samples for a k-gene model

Description

Calculate marginal posteriors for location, posterior means for coefficients, and the Bayes Factor for k vs k-1 genes

Usage

## S3 method for class 'swap':
summary(object, method=NULL, ncoef=length(sc.obj$alt.coef), nloc=sc.obj$nloc)

Arguments

object

The result of swap

method

Optional. One of the supported methods, see make.analysis.obj

ncoef

Optional. The number of coefficients in the class of models. Typically, 2*nloc for method=="F2" and nloc for all other methods

nloc

Optional. The number of loci in the sample space.

Value

• A list with components:
• loc.posterior
  A vector of (marginal) posterior odds for each locus compared to a no gene model
• coefs
  Posterior means of coefficients.
• ratio
  A list with components mean, an estimate of the Bayes Factor for k versus k-1 gene models, and var, an estimate of its variance.

synopsis

summary.swap(object, method, ncoef, nloc, ...)