little.ana.bc

A simulation of a BC1 cross of 150 organisms with a genome of around 500
cM consisting of 5 chromosomes. The format is that created by
<code><a href="/link/make.analysis.obj?package=bqtl&version=1.0-7" rd-options="" data-mini-rdoc="bqtl::make.analysis.obj">make.analysis.obj</a></code>This dataset is built up from several others. The basic data are:
<item>little.bc.pheno</item>{A vector of phenotype data}<item>little.bc.markers</item>{A <code>map.frame</code> of marker data} and<item>little.dx</item>{A data frame with 50 rows and 2 columns that specify
 the map locations of a simulated set of markers }These are used to construct
<item>little.mf.5</item>{A <code>map.frame</code> with 'pseudo-markers' at least
 every 5 cM made from
 
 <code>little.mf.5 &lt;- make.map.frame(little.map.frame,
 nint=marker.fill( little.map.frame, reso=5, TRUE ))</code>
}Then phenotype, covariate, and marker data are combined
with <code>little.mf.5</code>
<item>little.bc.pheno</item>{ A <code>data.frame</code> with the
 variable <code>bc.phenotype</code>}
<item>little.bc.markers</item>{A <code>data.frame</code> with marker state information}

datasets

QTL mapping toolkit for inbred crosses and
 recombinant inbred lines. Includes maximum likelihood and Bayesian tools.

little.ana.bc: A simulated dataset

Description

Arguments

See Also