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braidReports

The goal of braidReports is to provide simple, intuitive, flexible tools to visualize combined action analyses and response surfaces, building on the power and breadth of the ggplot2 plotting system.

Example BRAID Analsyis and Report

Here is how you would run a full BRAID analysis (using the braidrm example dataset synergisticExample) and produce a one-page report:

library(braidReports)
#> Loading required package: braidrm
#> Loading required package: ggplot2
#> Warning: package 'ggplot2' was built under R version 4.4.1
## Run and Report a BRAID Analysis:
surface <- synergisticExample

analysis <- runBraidAnalysis(measure ~ concA + concB, surface, defaults=c(0,1))

report <- makeBraidReport(analysis, c("A Drug","B Drug"),
                          levels=c(0.5, 0.9), limits=c(5,5))

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Version

Install

install.packages('braidReports')

Monthly Downloads

557

Version

1.0.1

License

GPL (>= 3)

Maintainer

Nathaniel Twarog

Last Published

September 29th, 2024

Functions in braidReports (1.0.1)

runBraidAnalysis

BRAID Surface Analysis
merckValues_stable

Best-Fit Bayesian Stabilized Merck OPPS BRAID Values
kappa_trans

BRAID kappa Transforms
geom_braid_contour

Smoothed BRAID Surface Contours
makeBraidReport

Render a BRAID Report
geom_braid_smooth

Smoothed BRAID Surfaces
basicBraidAnalysis

Basic BRAID Analysis Conversion
geom_braid

BRAID Heatmaps
braidReports-package

braidReports: Visualize Combined Action Response Surfaces and Report BRAID Analyses
merckValues_unstable

Best-Fit Unstabilized Merck OPPS BRAID Values
StatBraid

Base ggproto classes for braidReports