Coordinates for data from the AAl90 atlas
Network-based statistic for brain MRI data
Initialize variables for further use in brainGraph
Coordinates for data from the Destrieux atlas
Color graph vertices
"Add-one-patient" approach to estimate individual network contribution
Perform between-group tests at each vertex for a given vertex measure
Calculate a vertex's leverage centrality
Count number of inter-lobar connections from a given major lobe
Coordinates for data from the Desikan-Killiany atlas
Count number of edges between homologous regions of a brain graph
Check model residuals for each brain region
Color graph edges
Coordinates for data from the Destrieux atlas
Coordinates for data from BrainSuite atlas
Calculate Euclidean distance of edges
Create connection matrices for tractography analysis
Calculate correlation matrix and threshold
Coordinates for data from the Desikan-Killiany-Tourville atlas
Contract graph vertices based on brain lobe and hemisphere
Perform an analysis with random graphs for brain MRI data
Give vertices in a graph a lobe attribute.
Coordinates for data from the Desikan-Killiany-Tourville atlas
Coordinates for data from the Desikan-Killiany atlas
Bootstrapping for global graph measures
Coordinates for data from the AAl116 atlas
graph_neighborhood_multiple
Take the union of multiple neighborhood graphs
Plot global graph measures with shaded regions calculated from bootstrapping
Calculate permutation p-values and plot group differences
Calculate an asymmetry index based on edge counts
Plot global graph measures across densities
Create a data table with graph vertex measures
Calculate vertex participation coefficient
Plot group distributions of volumetric measures for a given brain region
Analysis of network robustness
Create an empty graph with attributes for brainGraph
Calculate the normalized rich club coefficient
Plot a graph with a specific spatial layout
Linear model residuals across brain regions
Draw an axial or sagittal slice of the MNI152 T1 image
Plot a correlation matrix
Plot normalized rich club coefficients against degree threshold
Permutation test for group difference of graph measures
GUI for plotting graphs overlaid on an MNI152 image or in a circle.
Write PNG files for a list of graphs
Calculate the rich club of a graph
Calculate the rich core of a graph
"Leave-one-out" approach to estimate individual network contribution
Create a data table with graph global measures
Write files to be used for visualization with BrainNet Viewer
set.brainGraph.attributes
Set a number of graph and vertex attributes useful in MRI analyses
Function to dynamically plot a graph
Plot vertex-level graph measures at a single density
Simulate N random graphs w/ same clustering and degree sequence as the input.
Transform a vector to have a different range
Calculate average Euclidean distance for each vertex
Coordinates for data from the LONI probabilistic brain atlas
Simulate a random graph with given degree sequence and clustering.
Calculate graph global, local, or nodal efficiency
Apply a rotation matrix to a set of points
Calculate graph small-worldness
Select edges for re-wiring.
Coordinates for data from Harvard-Oxford atlas
within_module_deg_z_score
Calculate vertex within-module degree z-score
Calculate graph vulnerability