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brainGraph (version 1.0.0)

choose.edges: Select edges for re-wiring.

Description

This function selects edges to be re-wired when simulating random graphs. It is based on the algorithm by Bansal et al. (2009), BMC Bioinformatics.

Usage

choose.edges(A, degs, degs.large)

Arguments

A
Numeric (adjacency) matrix
degs
Integer vector of the graph's degree sequence
degs.large
Integer vector of vertex numbers with degree greater than one

Value

A data frame with four elements; two edges will be removed and two edges will be added between the four vertices.

References

Bansal S., Khandelwal S., Meyers L.A. (2009) Exploring biological network structure with clustered random networks. BMC Bioinformatics, 10:405-421.

See Also

sim.rand.graph.clust