brainGraph (version 2.2.0)

plot.brainGraph_permute: Plot results from permutation testing

Description

Plot results from permutation testing

Usage

# S3 method for brainGraph_permute
plot(x, measure = NULL,
  alternative = c("two.sided", "less", "greater"), alpha = 0.05,
  p.sig = c("p", "p.fdr"), ptitle = NULL, ...)

Arguments

x

A brainGraph_permute object (output by brainGraph_permute).

measure

Character string of the measure to focus on (if level='graph')

alternative

Character string, whether to do a two- or one-sided test (default: 'two.sided')

alpha

Numeric; the significance level (default: 0.05)

p.sig

Character string specifying which p-value to use for displaying significant results (default: p)

ptitle

Character string specifying a title for the plot (default: NULL)

...

Unused

Value

A list of ggplot objects