FDR_corrected

Computes False Discovery Rate using SNP correlation as proximity measure.

internal

Performs Bayesian variable screening and selection for ultra-high dimensional linear regression models.Also contains an user friendly web application to perform multi trait GWAS.

Dongjin Li

bravo

Bayesian Screening and Variable Selection

Debarshi Chakraborty

Somak Dutta

Vivekananda Roy

FDR_corrected function

<dl><dt>model</dt>
<dd>Integer vector of selected SNP indices.</dd>
<dt>truth</dt>
<dd>Integer vector of true causal SNP indices.</dd>
<dt>x</dt>
<dd>SNP matrix.</dd>
<dt>threshold</dt>
<dd>Correlation threshold (default 0.9).</dd></dl>

Arguments

FDR using correlation threshold — FDR_corrected

<dl>

<dt>model</dt>
<dd>Integer vector of selected SNP indices.</dd>


<dt>truth</dt>
<dd>Integer vector of true causal SNP indices.</dd>


<dt>x</dt>
<dd>SNP matrix.</dd>


<dt>threshold</dt>
<dd>Correlation threshold (default 0.9).</dd>

</dl>

FDR_corrected: FDR using correlation threshold

Description

Usage

Arguments