FPR_corrected

Computes False Positive Rate using SNP correlation as proximity measure.

internal

Performs Bayesian variable screening and selection for ultra-high dimensional linear regression models.Also contains an user friendly web application to perform multi trait GWAS.

Dongjin Li

bravo

Bayesian Screening and Variable Selection

Debarshi Chakraborty

Somak Dutta

Vivekananda Roy

FPR_corrected function

<dl><dt>model</dt>
<dd>Integer vector of selected SNP indices.</dd>
<dt>truth</dt>
<dd>Integer vector of true causal SNP indices.</dd>
<dt>x</dt>
<dd>SNP matrix.</dd>
<dt>threshold</dt>
<dd>Correlation threshold (default 0.9).</dd></dl>

Arguments

FPR using correlation threshold — FPR_corrected

<dl>

<dt>model</dt>
<dd>Integer vector of selected SNP indices.</dd>


<dt>truth</dt>
<dd>Integer vector of true causal SNP indices.</dd>


<dt>x</dt>
<dd>SNP matrix.</dd>


<dt>threshold</dt>
<dd>Correlation threshold (default 0.9).</dd>

</dl>

FPR_corrected: FPR using correlation threshold

Description

Usage

Arguments