TPR_corrected

Computes True Positive Rate using SNP correlation as proximity measure.

internal

Performs Bayesian variable screening and selection for ultra-high dimensional linear regression models.Also contains an user friendly web application to perform multi trait GWAS.

Dongjin Li

bravo

Bayesian Screening and Variable Selection

Debarshi Chakraborty

Somak Dutta

Vivekananda Roy

TPR_corrected function

<dl><dt>model</dt>
<dd>Integer vector of selected SNP indices.</dd>
<dt>truth</dt>
<dd>Integer vector of true causal SNP indices.</dd>
<dt>x</dt>
<dd>SNP matrix.</dd>
<dt>threshold</dt>
<dd>Correlation threshold (default 0.9).</dd></dl>

Arguments

TPR using correlation threshold — TPR_corrected

<dl>

<dt>model</dt>
<dd>Integer vector of selected SNP indices.</dd>


<dt>truth</dt>
<dd>Integer vector of true causal SNP indices.</dd>


<dt>x</dt>
<dd>SNP matrix.</dd>


<dt>threshold</dt>
<dd>Correlation threshold (default 0.9).</dd>

</dl>

TPR_corrected: TPR using correlation threshold

Description

Usage

Arguments