clean

Removes duplicate SNPs and filters low MAF variants.

internal

Performs Bayesian variable screening and selection for ultra-high dimensional linear regression models.Also contains an user friendly web application to perform multi trait GWAS.

Dongjin Li

bravo

Bayesian Screening and Variable Selection

Debarshi Chakraborty

Somak Dutta

Vivekananda Roy

clean function

<dl><dt>SNPmat</dt>
<dd>A sparse SNP matrix (dgCMatrix).</dd>
<dt>MAF_threshold</dt>
<dd>Minor Allele Frequency cutoff (default 0.05).</dd></dl>

Arguments

Clean SNP Matrix — clean

<dl>

<dt>SNPmat</dt>
<dd>A sparse SNP matrix (dgCMatrix).</dd>


<dt>MAF_threshold</dt>
<dd>Minor Allele Frequency cutoff (default 0.05).</dd>

</dl>

clean: Clean SNP Matrix

Description

Usage

Arguments