run_all_params

Simulates a phenotype and evaluates all parameter combinations via Jaccard index.

internal

Performs Bayesian variable screening and selection for ultra-high dimensional linear regression models.Also contains an user friendly web application to perform multi trait GWAS.

Dongjin Li

bravo

Bayesian Screening and Variable Selection

Debarshi Chakraborty

Somak Dutta

Vivekananda Roy

run_all_params function

<dl><dt>k</dt>
<dd>Simulation replicate index.</dd>
<dt>x</dt>
<dd>Cleaned SNP matrix.</dd>
<dt>R2</dt>
<dd>Heritability (default 0.5).</dd>
<dt>nspike</dt>
<dd>Number of causal SNPs to simulate (default 20).</dd>
<dt>betamax</dt>
<dd>Maximum effect size magnitude.</dd></dl>

Arguments

Run SVEN Across Parameter Grid — run_all_params

<dl>

<dt>k</dt>
<dd>Simulation replicate index.</dd>


<dt>x</dt>
<dd>Cleaned SNP matrix.</dd>


<dt>R2</dt>
<dd>Heritability (default 0.5).</dd>


<dt>nspike</dt>
<dd>Number of causal SNPs to simulate (default 20).</dd>


<dt>betamax</dt>
<dd>Maximum effect size magnitude.</dd>

</dl>

run_all_params: Run SVEN Across Parameter Grid

Description

Usage

Arguments