unite.sven

Propagates MIPs from SVEN hits to the full SNP matrix via LD.

internal

Performs Bayesian variable screening and selection for ultra-high dimensional linear regression models.Also contains an user friendly web application to perform multi trait GWAS.

Dongjin Li

bravo

Bayesian Screening and Variable Selection

Debarshi Chakraborty

Somak Dutta

Vivekananda Roy

unite.sven function

<dl><dt>x</dt>
<dd>Cleaned SNP matrix.</dd>
<dt>bigx</dt>
<dd>Full (uncleaned) SNP matrix.</dd>
<dt>basic_sven_object</dt>
<dd>Fitted SVEN object.</dd>
<dt>y</dt>
<dd>Phenotype vector.</dd>
<dt>ehits</dt>
<dd>Expected number of hits.</dd>
<dt>threshold</dt>
<dd>MIP threshold (default 0).</dd></dl>

Arguments

UNITE: Post-process SVEN Model — unite.sven

<dl>

<dt>x</dt>
<dd>Cleaned SNP matrix.</dd>


<dt>bigx</dt>
<dd>Full (uncleaned) SNP matrix.</dd>


<dt>basic_sven_object</dt>
<dd>Fitted SVEN object.</dd>


<dt>y</dt>
<dd>Phenotype vector.</dd>


<dt>ehits</dt>
<dd>Expected number of hits.</dd>


<dt>threshold</dt>
<dd>MIP threshold (default 0).</dd>

</dl>

unite.sven: UNITE: Post-process SVEN Model

Description

Usage

Arguments