build_frequency_count_tables

Build frequency count tables from an OTU table

Understanding the drivers of microbial diversity is an important frontier of microbial ecology, and investigating the diversity of samples from microbial ecosystems is a common step in any microbiome analysis. 'breakaway' is the premier package for statistical analysis of microbial diversity. 'breakaway' implements the latest and greatest estimates of species richness, described in Willis and Bunge (2015) <doi:10.1111/biom.12332>, Willis et al. (2017) <doi:10.1111/rssc.12206>, and Willis (2016) <arXiv:1604.02598>, as well as the most commonly used estimates, including the objective Bayes approach described in Barger and Bunge (2010) <doi:10.1214/10-BA527>.

Amy D Willis

breakaway

Species Richness Estimation and Modeling

Bryan D Martin

Pauline Trinh

Sarah Teichman

David Clausen

Kathryn Barger

John Bunge

build_frequency_count_tables function

<dl><dt>the_table</dt>
<dd>An OTU table as a data frame or a matrix. Columns are the
samples and rows give the taxa.</dd></dl>

Arguments

Build frequency count tables from an OTU table — build_frequency_count_tables

<dl>

<dt>the_table</dt>
<dd>An OTU table as a data frame or a matrix. Columns are the
samples and rows give the taxa.</dd>

</dl>

build_frequency_count_tables: Build frequency count tables from an OTU table

Description

Usage

Value

Arguments