make_design_matrix

Understanding the drivers of microbial diversity is an important frontier of microbial ecology, and investigating the diversity of samples from microbial ecosystems is a common step in any microbiome analysis. 'breakaway' is the premier package for statistical analysis of microbial diversity. 'breakaway' implements the latest and greatest estimates of species richness, described in Willis and Bunge (2015) <doi:10.1111/biom.12332>, Willis et al. (2017) <doi:10.1111/rssc.12206>, and Willis (2016) <arXiv:1604.02598>, as well as the most commonly used estimates, including the objective Bayes approach described in Barger and Bunge (2010) <doi:10.1214/10-BA527>.

Amy D Willis

breakaway

Species Richness Estimation and Modeling

Bryan D Martin

Pauline Trinh

Sarah Teichman

David Clausen

Kathryn Barger

John Bunge

make_design_matrix function

<dl><dt>phyloseq_object</dt>
<dd>A phyloseq object</dd>
<dt>variables</dt>
<dd>variable names</dd></dl>

Arguments

Make design matrix — make_design_matrix

<dl>

<dt>phyloseq_object</dt>
<dd>A phyloseq object</dd>


<dt>variables</dt>
<dd>variable names</dd>

</dl>

Make design matrix

make_design_matrix: Make design matrix

Description

Usage

Value

Arguments