sample_size_figure

Plot the power obtained with sample size

Understanding the drivers of microbial diversity is an important frontier of microbial ecology, and investigating the diversity of samples from microbial ecosystems is a common step in any microbiome analysis. 'breakaway' is the premier package for statistical analysis of microbial diversity. 'breakaway' implements the latest and greatest estimates of species richness, described in Willis and Bunge (2015) <doi:10.1111/biom.12332>, Willis et al. (2017) <doi:10.1111/rssc.12206>, and Willis (2016) <arXiv:1604.02598>, as well as the most commonly used estimates, including the objective Bayes approach described in Barger and Bunge (2010) <doi:10.1214/10-BA527>.

Amy D Willis

breakaway

Species Richness Estimation and Modeling

Bryan D Martin

Pauline Trinh

Sarah Teichman

David Clausen

Kathryn Barger

John Bunge

sample_size_figure function

<dl><dt>control_group_est</dt>
<dd>An estimate of the alpha diversity parameter for
the control group</dd>
<dt>se_est</dt>
<dd>An estimate of the (common) standard deviation</dd>
<dt>diff</dt>
<dd>An estimate of the difference between the control and
non-control groups</dd>
<dt>samples</dt>
<dd>Number of bootstrap resamples used to estimate the sample
size. Increase for a more accurate estimate.</dd></dl>

Arguments

Plot the power obtained with sample size — sample_size_figure

<dl>

<dt>control_group_est</dt>
<dd>An estimate of the alpha diversity parameter for
the control group</dd>


<dt>se_est</dt>
<dd>An estimate of the (common) standard deviation</dd>


<dt>diff</dt>
<dd>An estimate of the difference between the control and
non-control groups</dd>


<dt>samples</dt>
<dd>Number of bootstrap resamples used to estimate the sample
size. Increase for a more accurate estimate.</dd>

</dl>

sample_size_figure: Plot the power obtained with sample size

Description

Usage

Value

Arguments