wlrm_transformed

This function implements the transformed version of the species richness
estimation procedure outlined in Rocchetti, Bunge and Bohning (2011).

models

diversity

Understanding the drivers of microbial diversity is an important frontier of microbial ecology, and investigating the diversity of samples from microbial ecosystems is a common step in any microbiome analysis. 'breakaway' is the premier package for statistical analysis of microbial diversity. 'breakaway' implements the latest and greatest estimates of species richness, described in Willis and Bunge (2015) <doi:10.1111/biom.12332>, Willis et al. (2017) <doi:10.1111/rssc.12206>, and Willis (2016) <arXiv:1604.02598>, as well as the most commonly used estimates, including the objective Bayes approach described in Barger and Bunge (2010) <doi:10.1214/10-BA527>.

Amy D Willis

breakaway

Species Richness Estimation and Modeling

Bryan D Martin

Pauline Trinh

Sarah Teichman

David Clausen

Kathryn Barger

John Bunge

wlrm_transformed function

<dl><dt>input_data</dt>
<dd>An input type that can be processed by <code>convert()</code> or a <code>phyloseq</code> object</dd>
<dt>cutoff</dt>
<dd>Maximum frequency count to use</dd>
<dt>print</dt>
<dd>Deprecated; only for backwards compatibility</dd>
<dt>plot</dt>
<dd>Deprecated; only for backwards compatibility</dd>
<dt>answers</dt>
<dd>Deprecated; only for backwards compatibility</dd></dl>

Arguments

Author

The transformed weighted linear regression estimator for species richness estimation — wlrm_transformed

<dl>

<dt>input_data</dt>
<dd>An input type that can be processed by <code>convert()</code> or a <code>phyloseq</code> object</dd>


<dt>cutoff</dt>
<dd>Maximum frequency count to use</dd>


<dt>print</dt>
<dd>Deprecated; only for backwards compatibility</dd>


<dt>plot</dt>
<dd>Deprecated; only for backwards compatibility</dd>


<dt>answers</dt>
<dd>Deprecated; only for backwards compatibility</dd>

</dl>

The transformed weighted linear regression estimator for species richness estimation

wlrm_transformed: The transformed weighted linear regression estimator for species richness estimation

Description

Usage

Value

Arguments

Author

References

See Also

Examples