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briskaR (version 0.1.2)

Biological Risk Assessment

Description

A spatio-temporal exposure-hazard model for assessing biological risk and impact. The model is based on stochastic geometry for describing the landscape and the exposed individuals, a dispersal kernel for the dissemination of contaminants and an ecotoxicological equation. Walker E, Leclerc M, Rey JF, Beaudouin R, Soubeyrand S, and Messean A, (2017), A Spatio-Temporal Exposure-Hazard Model for Assessing Biological Risk and Impact, Risk Analysis, .

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Version

Install

install.packages('briskaR')

Monthly Downloads

68

Version

0.1.2

License

GPL (>= 2) | file LICENSE

Maintainer

Jean-Francois Rey

Last Published

June 7th, 2018

Functions in briskaR (0.1.2)

print,Landscape-method

Print Method for Landscape
loadIndividuals

Wrapper function loadIndividuals
plotEcotoxic

Plot internal toxic concentration method
Precipitation

Precipitation data
briskaR-package

Biological Risk Assessment
maize_65

Real Landscape
maize.emitted_pollen

Pollen sources emission from maize crop.
show,Landscape-method

Show Method for Landscape
maize.toxicintensity61

Pollen dispersion at time 61 over the maize.landscape from toxicIntensity
maize.individuals

Maize_65 Individuals repartitions
maize.landscape

Real Landscape maize_65 with attributs
maize.proportion_pollen

Maize Proportion Pollen
simulateIndividuals

Wrapper function SimulateIndividuals
loadLandscapeSIG

Create a Landscape object from SIG shapefile file
create.pollen.sources

Pollen sources emission simulation
briskaRLoadInternProjection

Load an internal working projection PROJ.4
simulateLandscape

SimulateLandscape Method
show,Individuals-method

Show a summary of Individuals information
Individuals plot

Plot method for Individuals-class
Individuals

Class Individuals
print,Individuals-method

print Individuals informations
Landscape

Class Landscape
plot,Landscape,Individuals-method

plot Landscape & Individuals method
LAMBERT_93

LAMBERT_93
toxicIntensity

toxicIntensity Method
saveIntoFile

Save Particles Dispersion 3D Array to tiff file
getSPSources

Method to get SpatialPolygons Sources from a Landscape
simulateThickMargins

simulateThickMargins Method
getIndividualsLife

Method to get Individuals Life information
GetInternProjection

Get the internal working projection PROJ.4
[,Individuals

Get an individual information
plot Landscape-class

Plot Method for a Landscape-class
simulateInitialPartition

simulateInitialPartition Method
loadLandscape

Wrapper function : loadLandscape
demo.pollen.run

briskaR package pollen demonstration
ecoToxic

EcoToxicological model method