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broman (version 0.38-2)

Karl Broman's R code

Description

Miscellaneous R functions

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Version

Install

install.packages('broman')

Monthly Downloads

2,654

Version

0.38-2

License

GPL-3

Maintainer

Karl W Broman

Last Published

October 15th, 2012

Functions in broman (0.38-2)

arrowlocator

Use the locator function to plot an arrow
get0

get with paste
bromanversion

Installed version of R/broman
paste.

paste with dot separator
simp

Numerical integration
mypairs

My scatterplot matrix
chisq

Chi-square test by simuation for a two-way table
revrainbow

Create vector of colors from blue to red
broman-internal

Internal broman functions
normalize

Quantile normalization
paired.perm.test

Paired permutation t-test
attachwork

Attach a workspace
paste00

paste with null or dot as separator and with collapse
runningmean

Running mean, sum, or median
attachfile

Attach a workspace
objectsizes

Calculate sizes of all objects in workspace
myround

Round a number, preserving extra 0's
loadfile

Load a workspace
venn

Plot to-scale Venn diagram
tripoints

Plot points within a Holmans triangle
fisher

Fisher's exact test for a two-way table
convert2hex

Convert to hex
triarrow

Plot an arrow within a Holmans triangle
qr2

The QR decomposition of a matrix
hex2dec

Convert from hex to decimal
loadwork

Load a workspace
cf

Compare objects, including missing data pattern
grayplot

Plot with a gray background
quantileSE

Sample quantiles and their standard errors
h

View html version of help file
trilines

Plot lines within a Holmans triangle
runningratio

Running ratio
winsorize

Winsorize a vector
rmvn

Simulate multivariate normal
perm.test

Permutation t-test
manyboxplot

Boxplot-like figure for many groups
triplot

Plot Holmans triangle