{"Package":"bsseq","Version":"1.8.2","Title":"Analyze, manage and store bisulfite sequencing data","Description":"A collection of tools for analyzing and visualizing bisulfite\nsequencing data.","Authors@R":"c(person(c(\"Kasper\", \"Daniel\"), \"Hansen\", role = c(\"aut\", \"cre\"),\nemail = \"kasperdanielhansen@gmail.com\"),\nperson(\"Peter\", \"Hickey\", role = \"ctb\", email = \"peter.hickey@gmail.com\"))","Depends":"\nR (>= 3.3),\nmethods,\nBiocGenerics,\nGenomicRanges (>= 1.23.7),\nSummarizedExperiment (>= 0.1.1),\nparallel,\nlimma","Imports":"\nIRanges (>= 2.5.17),\nGenomeInfoDb,\nscales,\nstats,\ngraphics,\nBiobase,\nlocfit,\ngtools,\ndata.table,\nS4Vectors,\nR.utils (>= 2.0.0),\nmatrixStats (>= 0.50.0),\npermute","Suggests":"\nRUnit,\nbsseqData,\nBiocStyle,\nknitr","Collate":"\nhasGRanges.R\nBSseq_class.R\nBSseqTstat_class.R\nBSseq_utils.R\ncombine.R\nutils.R\nread.bsmooth.R\nread.bismark.R\nBSmooth.R\nBSmooth.tstat.R\ndmrFinder.R\ngof_stats.R\nplotting.R\nfisher.R\npermutations.R\nBSmooth.fstat.R\nBSseqStat_class.R\ngetStats.R","License":"Artistic-2.0","VignetteBuilder":"knitr","URL":"https://github.com/kasperdanielhansen/bsseq","LazyData":"yes","LazyDataCompression":"xz","BugReports":"https://github.com/kasperdanielhansen/bsseq/issues","biocViews":"DNAMethylation","readme":"# R package: bsseq\nThis is the developer version of Bioconductor package [bsseq](http://bioconductor.org/packages/devel/bioc/html/bsseq.html). Install in R as:\n\n```r\nsource('http://bioconductor.org/biocLite.R')\nuseDevel(TRUE)\nbiocLite('bsseq')\n```\n\n## R CMD check results\n\n## Software status\n\n| Resource: | Bioconductor | Travis CI |\n| ------------- | ------------------- | ------------- |\n| _Platforms:_ | _Multiple_ | _Linux_ |\n| R CMD check | $\"Build$ (release)
$\"Build$ (devel) | $\"Build$ |\n| Test coverage | | $\"Coverage$ | |","repoType":"bioconductor"}

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R package: bsseq

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Functions in bsseq (1.8.2)