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bsub (version 1.0.0)

Submitter and Monitor of the 'LSF Cluster'

Description

It submits R code/R scripts/shell commands to 'LSF cluster' (, the 'bsub' system) without leaving R. There is also an interactive 'shiny' app for monitoring the job status.

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Install

install.packages('bsub')

Monthly Downloads

237

Version

1.0.0

License

MIT + file LICENSE

Issues

Pull Requests

Stars

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Repository

https://github.com/jokergoo/bsub

Maintainer

Zuguang Gu

Last Published

July 30th, 2020

Functions in bsub (1.0.0)

Parameters for bsub

A browser-based interactive job monitor

Run command on submission node

job_status_by_name

Job status by name

Retrieve saved variable

Wait until all jobs are finished

Submit shell commands

check_dump_files

Check whether there are dump files

Summary of jobs

Submit a random job

Clear temporary dir

Get the dependency of current jobs

Log for the running/finished/failed job

Submit R script

plot_dependency

Plot the job dependency tree

job_status_by_id

Job status by id

Print the configurations

is_job_finished

Test whether the jobs are finished

Disconnect ssh connection

Connect to submisstion via ssh

Recent jobs from all status

Print current configuation

Summary of jobs