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bsub (version 2.0.6)

Submitter and Monitor of the 'LSF Cluster'

Description

It submits R code/R scripts/shell commands to 'LSF cluster' (, the 'bsub' system) without leaving R. There is also an interactive 'shiny' application for monitoring job status.

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Install

install.packages('bsub')

Monthly Downloads

250

Version

2.0.6

License

MIT + file LICENSE

Issues

7

Pull Requests

0

Stars

26

Forks

5

Maintainer

Zuguang Gu

Last Published

November 28th, 2025

Functions in bsub (2.0.6)

job_rerun

Rerun jobs
retrieve_var

Retrieve saved variable
job_dependency_all

Job dependencies
bsub_opt

Parameters for bsub
bjobs

Summary of jobs
job_log

Obtain Job log
bsub_chunk

Submit jobs
ssh_connect

Connect to submisstion via ssh
formatFileSize

Format file size
print.bjobs

Summary of jobs
bkill

Kill jobs
random_job

Submit a random job
bconf

Print current configurations
run_cmd

Run command on submission node
list_dump_files

Check whether there are dump files
bjobs_reset_timestamp

Clear job history
config_bsub

Configure bsub global options
job_status_by_name

Job status by job ID or name
monitor

Browser-based interactive job monitor
bjobs_barplot

Visualize statistics of jobs
list_temp_files

Clear temporary dir