get_link_list_rename

This function converts an adjacency matrix to a data frame
of network links, subset to the most important ones.

Given an expression matrix from a bulk sequencing experiment,
pre-processes it and creates a shiny app for interactive data
analysis and visualisation. The app contains quality checks,
differential expression analysis, volcano and cross plots,
enrichment analysis and gene regulatory network inference,
and can be customised to contain more panels by the user.

Ilias Moutsopoulos

bulkAnalyseR

Interactive Shiny App for Bulk Sequencing Data

Eleanor Williams

Irina Mohorianu

get_link_list_rename function

<dl><dt>weightMat</dt>
<dd>the (weighted) adjacency matrix - regulators in rows,
targets in columns</dd>
<dt>plotConnections</dt>
<dd>the number of connections to subset to</dd></dl>

Arguments

Convert the adjacency matrix to network links — get_link_list_rename

<dl>

<dt>weightMat</dt>
<dd>the (weighted) adjacency matrix - regulators in rows,
targets in columns</dd>


<dt>plotConnections</dt>
<dd>the number of connections to subset to</dd>

</dl>

get_link_list_rename: Convert the adjacency matrix to network links

Description

Usage

Value

Arguments

Examples