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Version

Version

1.10.0

License

Artistic-2.0

Issues

12

Pull Requests

2

Stars

18

Forks

14

Maintainer

Rafael A Irizarry

Last Published

February 15th, 2017

Functions in bumphunter (1.10.0)

loessByCluster

Apply loess smoothing to values within each spatially-defined cluster.
locfitByCluster

Apply local regression smoothing to values within each spatially-defined cluster.
annotateNearest

Annotate the results of nearest
annotateTranscripts

Annotate transcripts
TT

Example data
matchGenes

Find and annotate closest genes to genomic regions
regionFinder

Find non-zero regions in vector
bumphunter

Bumphunter
clusterMaker

Make clusters of genomic locations based on distance
dummyData

Generate dummy data for use with bumphunter functions
getSegments

Segment a vector into positive, zero, and negative regions
runmedByCluster

Apply running median smoothing to values within each spatially-defined cluster
smoother

Smooth genomic profiles