RDocumentation
Moon
Learn R
Search all packages and functions
⚠️
There's a newer version (1.12.0) of this package.
Take me there.
bumphunter (version 1.6.0)
Bump Hunter
Description
Tools for finding bumps in genomic data
Copy Link
Copy
Link to current version
Version
Version
1.12.0
1.10.0
1.8.0
1.6.0
Down Chevron
Version
1.6.0
License
Artistic-2.0
Issues
11
Pull Requests
2
Stars
15
Forks
14
Repository
https://github.com/ririzarr/bumphunter
Maintainer
Rafael A Irizarry
Last Published
January 1st, 1970
Functions in bumphunter (1.6.0)
Search functions
annotateNearest
Annotate Nearest
bumphunter
Bumphunter
regionFinder
Find non-zero regions in vector
runmedByCluster
Apply running median smoothing to values within each spatially-defined cluster
clusterMaker
Make clusters of genomic locations based on distance
dummyData
Generate dummy data for use with bumphunter functions
getSegments
Segment a vector into positive, zero, and negative regions
smoother
Smooth genomic profiles
locfitByCluster
Apply local regression smoothing to values within each spatially-defined cluster.
TT
HG19 Transcripts
loessByCluster
Apply loess smoothing to values within each spatially-defined cluster.
pointMatch
Fuzzy Matching of Genomic Locations